PBSV

Result

Overview

## [1] "E2348-69"

Summary stats

	Count
Tot	10
DEL	4
DUP	0
INS	2
INV	4
TRA	0

SV types by length

## Warning in scale_y_continuous(trans = "log10"): log-10 transformation
## introduced infinite values.

## Warning: Removed 18 rows containing missing values or values outside the scale range
## (`geom_bar()`).

SV types by chr

SessionInfo

## ezRun tag: ed29b51d935a7281b59ff7ca5e23d187e8f449d3 
## ezRun github link: https://github.com/uzh/ezRun/tree/ed29b51d935a7281b59ff7ca5e23d187e8f449d3 
##  
## R version 4.4.2 (2024-10-31)
## Platform: x86_64-pc-linux-gnu
## Running under: Debian GNU/Linux 12 (bookworm)
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.11.0 
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: Europe/Zurich
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats4    stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] knitr_1.49                  VariantAnnotation_1.52.0   
##  [3] Rsamtools_2.22.0            SummarizedExperiment_1.36.0
##  [5] Biobase_2.66.0              MatrixGenerics_1.18.0      
##  [7] matrixStats_1.4.1           ezRun_3.20.1               
##  [9] lubridate_1.9.4             forcats_1.0.0              
## [11] stringr_1.5.1               dplyr_1.1.4                
## [13] purrr_1.0.2                 readr_2.1.5                
## [15] tidyr_1.3.1                 tibble_3.2.1               
## [17] ggplot2_3.5.1               tidyverse_2.0.0            
## [19] GenomicRanges_1.58.0        Biostrings_2.74.0          
## [21] GenomeInfoDb_1.42.1         XVector_0.46.0             
## [23] IRanges_2.40.1              S4Vectors_0.44.0           
## [25] BiocGenerics_0.52.0         data.table_1.16.4          
## 
## loaded via a namespace (and not attached):
##  [1] tidyselect_1.2.1         farver_2.1.2             blob_1.2.4              
##  [4] bitops_1.0-9             fastmap_1.2.0            RCurl_1.98-1.16         
##  [7] GenomicAlignments_1.42.0 XML_3.99-0.17            digest_0.6.37           
## [10] timechange_0.3.0         lifecycle_1.0.4          KEGGREST_1.46.0         
## [13] RSQLite_2.3.9            magrittr_2.0.3           compiler_4.4.2          
## [16] sass_0.4.9               rlang_1.1.4              tools_4.4.2             
## [19] yaml_2.3.10              rtracklayer_1.66.0       labeling_0.4.3          
## [22] S4Arrays_1.6.0           bit_4.5.0.1              curl_6.0.1              
## [25] DelayedArray_0.32.0      abind_1.4-8              BiocParallel_1.40.0     
## [28] withr_3.0.2              grid_4.4.2               colorspace_2.1-1        
## [31] scales_1.3.0             cli_3.6.3                rmarkdown_2.29          
## [34] crayon_1.5.3             generics_0.1.3           httr_1.4.7              
## [37] tzdb_0.4.0               rjson_0.2.23             DBI_1.2.3               
## [40] cachem_1.1.0             zlibbioc_1.52.0          parallel_4.4.2          
## [43] AnnotationDbi_1.68.0     restfulr_0.0.15          vctrs_0.6.5             
## [46] Matrix_1.7-1             jsonlite_1.8.9           hms_1.1.3               
## [49] bit64_4.5.2              GenomicFeatures_1.58.0   jquerylib_0.1.4         
## [52] glue_1.8.0               codetools_0.2-20         stringi_1.8.4           
## [55] gtable_0.3.6             BiocIO_1.16.0            UCSC.utils_1.2.0        
## [58] munsell_0.5.1            pillar_1.10.0            htmltools_0.5.8.1       
## [61] GenomeInfoDbData_1.2.13  BSgenome_1.74.0          R6_2.5.1                
## [64] evaluate_1.0.1           lattice_0.22-6           png_0.1-8               
## [67] memoise_2.0.1            bslib_0.8.0              SparseArray_1.6.0       
## [70] xfun_0.49                pkgconfig_2.0.3