NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,231.4 |
| Mean read quality |
9.4 |
| Median read length |
4,253.5 |
| Median read quality |
10.2 |
| Number of reads |
31,032.0 |
| Read length N50 |
20,333.0 |
| STDEV read length |
14,187.5 |
| Total bases |
286,467,413.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
17914 (57.7%) 185.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| >Q20 |
0 (0.0%) 0.0Mb |
| >Q25 |
0 (0.0%) 0.0Mb |
| >Q30 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (808) |
| 2 |
13.1 (198) |
| 3 |
12.9 (291) |
| 4 |
12.8 (6465) |
| 5 |
12.8 (1413) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
206567 (11.3) |
| 2 |
205035 (10.0) |
| 3 |
193875 (10.8) |
| 4 |
181100 (10.2) |
| 5 |
177906 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot