Started on 2017-09-05 15:06:07 -- 

Documentation

Analysis: Count_QC

Input Dataset

Normalization method:

logMean

Log2 signal threshold:

3.322

Linear signal threshold:

10

Feature level:

gene

Number of features:

7126

Data Column Used:

matchCounts

Live Report and Visualizations

Data Files

Count_QC-raw-count.zip

Count_QC-normalized-signal.zip

Count_QC-rpkm.zip

Count_QC-tpm.zip

Count_QC-normalized-signal-viewHighExpressionGenes.html

Count Statistics

Sample correlation

Sample Clustering

Clustering of High Variance Features

Threshold for std. dev. of log2 signal across samples: 0.5

Number of features with high std. dev.: 1272

GO cluster tables

Cluster Plot

GO categories of feature clusters

Background color corresponds to the row colors in the heatmap plot.

BP

MF

CC

1

Cluster-BP-1.html

Cluster-MF-1.html

Cluster-CC-1.html

2

Cluster-BP-2.html

Cluster-MF-2.html

Cluster-CC-2.html

3

Cluster-BP-3.html

4

Cluster-MF-4.html

Cluster-CC-4.html

5

Cluster-BP-5.html

Cluster-MF-5.html

Cluster-CC-5.html

6

Cluster-BP-6.html

Cluster-MF-6.html

Cluster-CC-6.html

MDS-Plot

Scatter Plots by Conditions

Expression densities

Zero or negative counts are not represented by the area!

advanced Plots

sessionInfo.txt

Finished 2017-09-05 15:08:00